As a beneficiary of funding from the National Cancer Institute, we require specimen recipients to acknowledge the contribution of the ACSR in all presentations, publications, grants and patents resulting from the use of our specimens. Investigators are encouraged to use the recommended wording: Specimens were provided by AIDS and Cancer Specimen Resource, funded by the National Cancer Institute (UM1CA181255).   A listing of known manuscripts and abstracts utilizing ACSR specimens is available here.

  1. Nolan DJ, Rose R, Zhang R, Leong A, Fogel GB, Scholte LLS, Bethony JM, Bracci P, Lamers SL, McGrath MS. The Persistence of HIV Diversity, Transcription, and Nef Protein in Kaposi’s Sarcoma Tumors during Antiretroviral Therapy. Viruses. 2022 Dec 13;14(12):2774. doi: 10.3390/v14122774. PMID: 36560778; PMCID: PMC9782636.
  2. Wisner L, Larsen B, Maguire A. Manual Construction of a Tissue Microarray using the Tape Method and a Handheld Microarrayer. J Vis Exp. 2022 Jun 10;(184). doi: 10.3791/63086. PMID: 35758657.
  3. Martínez LE, Lensing S, Chang D, Magpantay LI, Mitsuyasu R, Ambinder RF, Sparano JA, Martínez-Maza O, Epeldegui M. Plasma extracellular vesicles bearing PD-L1, CD40, CD40L or TNF-RII are significantly reduced after treatment of AIDS-NHL. Sci Rep. 2022 Jun 2;12(1):9185. doi: 10.1038/s41598-022-13101-8. PMID: 35655072; PMCID: PMC9163074.
  4. Wisner L, Larsen B, Maguire A. Enhancing Tumor Content through Tumor Macrodissection. J Vis Exp. 2022 Feb 12;(180). doi: 10.3791/62961. PMID: 35225270.
  5. Moorad R, Juarez A, Landis JT, Pluta LJ, Perkins M, Cheves A, Dittmer DP. Whole-genome sequencing of Kaposi sarcoma-associated herpesvirus (KSHV/HHV8) reveals evidence for two African lineages. Virology. 2022 Mar;568:101-114. doi: 10.1016/j.virol.2022.01.005. Epub 2022 Feb 2. PMID: 35152042; PMCID: PMC8915436.
  6. Maddox LM, Silver S. Collaborating with a Graduate Marketing Class to Boost Awareness of the AIDS and Cancer Specimen Resource. Biopreserv Biobank. 2021 Oct;19(5):399-403. doi: 10.1089/bio.2021.0025. Epub 2021 May 21. PMID: 34028303; PMCID: PMC8573806.
  7. Schmelz M, Sanderson-November M, Humeida R, Cloete M, Mims M, Castro P, Leong A, Wisner L, Silver S. A Plan for Emergency Shutdown and Reopening for a Consortium of Biobanks. Biopreserv Biobank. 2021 Oct;19(5):394-398. doi: 10.1089/bio.2021.0038. Epub 2021 Oct 4. PMID: 34610247.
  8. Mellors JW, Guo S, Naqvi A, Brandt LD, Su L, Sun Z, Joseph KW, Demirov D, Halvas EK, Butcher D, Scott B, Hamilton A, Heil M, Karim B, Wu X, Hughes SH. Insertional activation of STAT3 and LCK by HIV-1 proviruses in T cell lymphomas. Sci Adv. 2021 Oct 15;7(42):eabi8795. doi: 10.1126/sciadv.abi8795. Epub 2021 Oct 13. PMID: 34644108; PMCID: PMC8514100.
  9. Markazi A, Meng W, Bracci PM, McGrath MS, Gao SJ. The Role of Bacteria in KSHV Infection and KSHV-Induced Cancers. Cancers (Basel). 2021 Aug 25;13(17):4269. doi: 10.3390/cancers13174269. PMID: 34503079; PMCID: PMC8428360.
  10. Martínez LE, Lensing S, Chang D, Magpantay LI, Mitsuyasu R, Ambinder RF, Sparano JA, Martínez-Maza O, Epeldegui M. Immune Activation and Microbial Translocation as Prognostic Biomarkers for AIDS-Related Non-Hodgkin Lymphoma in the AMC-034 Study. Clin Cancer Res. 2021 Aug 15;27(16):4642-4651. doi: 10.1158/1078-0432.CCR-20-4167. Epub 2021 Jun 15. PMID: 34131000; PMCID: PMC8364886.
  11. McCluskey SM, Kamelian K, Musinguzi N, Kigozi S, Boum Y 2nd, Bwana MB, Muzoora C, Brumme ZL, Carrington M, Carlson J, Foley B, Hunt PW, Martin JN, Bangsberg DR, Harrigan PR, Siedner MJ, Haberer JE, Lee GQ. Pre-treatment integrase inhibitor resistance is uncommon in antiretroviral therapy-naive individuals with HIV-1 subtype A1 and D infections in Uganda. AIDS. 2021 Jun 1;35(7):1083-1089. doi: 10.1097/QAD.0000000000002854. PMID: 33635845; PMCID: PMC8102316.
  12. Sanderson-November M, Silver S, Hooker V, Schmelz M. Biorepository best practices for research and clinical investigations. Contemp Clin Trials. 2022 May;116:106572. doi: 10.1016/j.cct.2021.106572. Epub 2021 Sep 25. PMID: 34583056; PMCID: PMC9275522.
  13. Gandhi MK, Hoang T, Law SC, Brosda S, O’Rourke K, Tobin JWD, Vari F, Murigneux V, Fink L, Gunawardana J, Gould C, Oey H, Bednarska K, Delecluse S, Trappe RU, Merida de Long L, Sabdia MB, Bhagat G, Hapgood G, Blyth E, Clancy L, Wight J, Hawkes E, Rimsza LM, Maguire A, Bojarczuk K, Chapuy B, Keane C. EBV-associated primary CNS lymphoma occurring after immunosuppression is a distinct immunobiological entity. Blood. 2021 Mar 18;137(11):1468-1477. doi: 10.1182/blood.2020008520. PMID: 33202420; PMCID: PMC7976507.
  14. Byakwaga H, Barbachano-Guerrero A, Wang D, McAllister S, Naphri K, Laker-Oketta M, Muzoora C, Hunt PW, Martin J, King CA. Association Between Immunoglobulin E Levels and Kaposi Sarcoma in African Adults With Human Immunodeficiency Virus Infection. J Infect Dis. 2021 Jan 4;223(1):101-108. doi: 10.1093/infdis/jiaa340. PMID: 32561934; PMCID: PMC7781465.
  15. Shponka V, Reveles CY, Alam S, Jaramillo M, Maguire A, Rimsza LM, Kendrick S. Frequent expression of activation-induced cytidine deaminase in diffuse large B-cell lymphoma tissues from persons living with HIV. AIDS. 2020 Nov 15;34(14):2025-2035. doi: 10.1097/QAD.0000000000002653. PMID: 32773475; PMCID: PMC9306295.
  16. Ramos JC, Sparano JA, Chadburn A, Reid EG, Ambinder RF, Siegel ER, Moore PC, Rubinstein PG, Durand CM, Cesarman E, Aboulafia D, Baiocchi R, Ratner L, Kaplan L, Capoferri AA, Lee JY, Mitsuyasu R, Noy A. Impact of Myc in HIV-associated non-Hodgkin lymphomas treated with EPOCH and outcomes with vorinostat (AMC-075 trial). Blood. 2020 Sep 10;136(11):1284-1297. doi: 10.1182/blood.2019003959. PMID: 32430507; PMCID: PMC7483436.
  17. Gagliardi A, Porter VL, Zong Z, Bowlby R, Titmuss E, Namirembe C, Griner NB, Petrello H, Bowen J, Chan SK, Culibrk L, Darragh TM, Stoler MH, Wright TC, Gesuwan P, Dyer MA, Ma Y, Mungall KL, Jones SJM, Nakisige C, Novik K, Orem J, Origa M, Gastier-Foster JM, Yarchoan R, Casper C, Mills GB, Rader JS, Ojesina AI, Gerhard DS, Mungall AJ, Marra MA. Analysis of Ugandan cervical carcinomas identifies human papillomavirus clade-specific epigenome and transcriptome landscapes. Nat Genet. 2020 Aug;52(8):800-810. doi: 10.1038/s41588-020-0673-7. Epub 2020 Aug 3. PMID: 32747824; PMCID: PMC7498180.
  18. Naipauer J, Salyakina D, Journo G, Rosario S, Williams S, Abba M, Shamay M, Mesri EA. High-throughput sequencing analysis of a “hit and run” cell and animal model of KSHV tumorigenesis. PLoS Pathog. 2020 Jun 30;16(6):e1008589. doi: 10.1371/journal.ppat.1008589. PMID: 32603362; PMCID: PMC7357787.
  19. Glinsmann-Gibson B, Wisner L, Stanton M, Larsen B, Rimsza L, Maguire A. Recommendations for Tissue Microarray Construction and Quality Assurance. Appl Immunohistochem Mol Morphol. 2020 Apr;28(4):325-330. doi: 10.1097/PAI.0000000000000739. PMID: 31033496; PMCID: PMC6813869.
  20. Asha K, Balfe N, Sharma-Walia N. Concurrent Control of the Kaposi’s Sarcoma-Associated Herpesvirus Life Cycle through Chromatin Modulation and Host Hedgehog Signaling: a New Prospect for the Therapeutic Potential of Lipoxin A4. J Virol. 2020 Apr 16;94(9):e02177-19. doi: 10.1128/JVI.02177-19. PMID: 32102879; PMCID: PMC7163125.
  21. Valiya Veettil M, Krishna G, Roy A, Ghosh A, Dutta D, Kumar B, Chakraborty S, Anju TR, Sharma-Walia N, Chandran B. Kaposi’s Sarcoma-Associated Herpesvirus Infection Induces the Expression of Neuroendocrine Genes in Endothelial Cells. J Virol. 2020 Mar 31;94(8):e01692-19. doi: 10.1128/JVI.01692-19. PMID: 31969437; PMCID: PMC7108831.
  22. Abere B, Li J, Zhou H, Toptan T, Moore PS, Chang Y. Kaposi’s Sarcoma-Associated Herpesvirus-Encoded circRNAs Are Expressed in Infected Tumor Tissues and Are Incorporated into Virions. mBio. 2020 Jan 7;11(1):e03027-19. doi: 10.1128/mBio.03027-19. PMID: 31911496; PMCID: PMC6946807.
  23. Musinguzi N, Castillo-Mancilla J, Morrow M, Byakwaga H, Mawhinney S, Burdo TH, Boum Y, Muzoora C, Bwana BM, Siedner MJ, Martin JN, Hunt PW, Bangsberg DR, Haberer JE. Antiretroviral Therapy Adherence Interruptions Are Associated With Systemic Inflammation Among Ugandans Who Achieved Viral Suppression. J Acquir Immune Defic Syndr. 2019 Dec 1;82(4):386-391. doi: 10.1097/QAI.0000000000002148. PMID: 31658181; PMCID: PMC6820698.
  24. Maguire A, Chen X, Wisner L, Malasi S, Ramsower C, Kendrick S, Barrett MT, Glinsmann-Gibson B, McGrath M, Rimsza LM. Enhanced DNA repair and genomic stability identify a novel HIV-related diffuse large B-cell lymphoma signature. Int J Cancer. 2019 Dec 1;145(11):3078-3088. doi: 10.1002/ijc.32381. Epub 2019 Jun 3. PMID: 31044434.
  25. Maguire A, Chen X, Wisner L, Ramsower C, Glinsmann-Gibson B, Rimsza LM. Over-Expression of Transferrin Receptor (TFRC/CD71) and Low Expression of Innate and Adaptive Immune Cell Subsets in HIV-Associated, GCB-DLBCL By Digital Gene Expression Profiling. Blood 2019. 2019 Nov 13; 134 (Supplement_1): 2783. doi: 10.1182/blood-2019-129346.
  26. Wong JP, Stuhlmiller TJ, Giffin LC, Lin C, Bigi R, Zhao J, Zhang W, Bravo Cruz AG, Park SI, Earp HS, Dittmer DP, Frye SV, Wang X, Johnson GL, Damania B. Kinome profiling of non-Hodgkin lymphoma identifies Tyro3 as a therapeutic target in primary effusion lymphoma. Proc Natl Acad Sci U S A. 2019 Aug 13;116(33):16541-16550. doi: 10.1073/pnas.1903991116. Epub 2019 Jul 25. PMID: 31346082; PMCID: PMC6697815.
  27. Maguire A., Chen X., Wisner L., Malasi S., Ramsower C., Kendrick S., Barrett M.T., Glinsmann-Gibson B., McGrath M, Rimsza LM. Reduced BCL2 Expression Suggests Alternative Survival Mechanisms in HIV(+) Diffuse Large B Cell Lymphoma (DLBCL) of Germinal Center Origin. N. Hematol Oncol, 2019 Jun 12;37:198-198.
  28. Lamers SL, Fogel GB, Nolan DJ, Barbier AE, Rose R, Singer EJ, Gonzalez-Perez MP, McGrath MS. Emerging Patterns in HIV-1 gp120 Variable Domains in Anatomical Tissues in the Absence of a Plasma Viral Load. AIDS Res Hum Retroviruses. 2019 Jun;35(6):588-596. doi: 10.1089/AID.2018.0267. Epub 2019 Apr 10. PMID: 30793919; PMCID: PMC6588100.
  29. Pinto LA, Wilkin TJ, Kemp TJ, Abrahamsen M, Isaacs-Soriano K, Pan Y, Webster-Cyriaque J, Palefsky JM, Giuliano AR. Oral and systemic HPV antibody kinetics post-vaccination among HIV-positive and HIV-negative men. Vaccine. 2019 Apr 24;37(18):2502-2510. doi: 10.1016/j.vaccine.2019.03.034. Epub 2019 Mar 30. PMID: 30940485; PMCID: PMC6863043.
  30. Kumar B, Roy A, Asha K, Sharma-Walia N, Ansari MA, Chandran B. HACE1, an E3 Ubiquitin Protein Ligase, Mitigates Kaposi’s Sarcoma-Associated Herpesvirus Infection-Induced Oxidative Stress by Promoting Nrf2 Activity. J Virol. 2019 Apr 17;93(9):e01812-18. doi: 10.1128/JVI.01812-18. PMID: 30787155; PMCID: PMC6475796.
  31. Ng E, Yao C, Shultz TO, Ross-Howe S, Wang SX. Magneto-nanosensor smartphone platform for the detection of HIV and leukocytosis at point-of-care. Nanomedicine. 2019 Feb;16:10-19. doi: 10.1016/j.nano.2018.11.007. Epub 2018 Nov 28. PMID: 30502420.
  32. Robetorye RS, Maguire A, Rosenthal AC, Rimsza LM. Profiling of lymphoma from formalin-fixed paraffin-embedded tissue. Semin Hematol. 2019 Jan;56(1):46-51. doi: 10.1053/j.seminhematol.2018.05.003. Epub 2018 May 28. PMID: 30573044.
  33. Chen L, Feng Z, Yue H, Bazdar D, Mbonye U, Zender C, Harding CV, Bruggeman L, Karn J, Sieg SF, Wang B, Jin G. Exosomes derived from HIV-1-infected cells promote growth and progression of cancer via HIV TAR RNA. Nat Commun. 2018 Nov 2;9(1):4585. doi: 10.1038/s41467-018-07006-2. PMID: 30389917; PMCID: PMC6214989.
  34. Toptan T, Abere B, Nalesnik MA, Swerdlow SH, Ranganathan S, Lee N, Shair KH, Moore PS, Chang Y. Circular DNA tumor viruses make circular RNAs. Proc Natl Acad Sci U S A. 2018 Sep 11;115(37):E8737-E8745. doi: 10.1073/pnas.1811728115. Epub 2018 Aug 27. PMID: 30150410; PMCID: PMC6140489.
  35. Cavallin LE, Ma Q, Naipauer J, Gupta S, Kurian M, Locatelli P, Romanelli P, Nadji M, Goldschmidt-Clermont PJ, Mesri EA. KSHV-induced ligand mediated activation of PDGF receptor-alpha drives Kaposi’s sarcomagenesis. PLoS Pathog. 2018 Jul 9;14(7):e1007175. doi: 10.1371/journal.ppat.1007175. PMID: 29985958; PMCID: PMC6053240.
  36. Vasquez JJ, Hussien R, Aguilar-Rodriguez B, Junger H, Dobi D, Henrich TJ, Thanh C, Gibson E, Hogan LE, McCune J, Hunt PW, Stoddart CA, Laszik ZG. Elucidating the Burden of HIV in Tissues Using Multiplexed Immunofluorescence and In Situ Hybridization: Methods for the Single-Cell Phenotypic Characterization of Cells Harboring HIV In Situ. J Histochem Cytochem. 2018 Jun;66(6):427-446. doi: 10.1369/0022155418756848. Epub 2018 Feb 20. PMID: 29462571; PMCID: PMC5977441.
  37. Castillo-Mancilla JR, Morrow M, Boum Y, Byakwaga H, Haberer JE, Martin JN, Bangsberg D, Mawhinney S, Musinguzi N, Huang Y, Tracy RP, Burdo TH, Williams K, Muzzora C, Hunt PW, Siedner MJ. Brief Report: Higher ART Adherence Is Associated With Lower Systemic Inflammation in Treatment-Naive Ugandans Who Achieve Virologic Suppression. J Acquir Immune Defic Syndr. 2018 Apr 15;77(5):507-513. doi: 10.1097/QAI.0000000000001629. PMID: 29346185; PMCID: PMC5844840.
  38. Ayers LW, Barbachano-Guerrero A, McAllister SC, Ritchie JA, Asiago-Reddy E, Bartlett LC, Cesarman E, Wang D, Rochford R, Martin JN, King CA. Mast Cell Activation and KSHV Infection in Kaposi Sarcoma. Clin Cancer Res. 2018 Oct 15;24(20):5085-5097. doi: 10.1158/1078-0432.CCR-18-0873. Epub 2018 Jul 3. PMID: 30084838; PMCID: PMC6191350.
  39. Lamers SL, Fogel GB, Liu ES, Barbier AE, Rodriguez CW, Singer EJ, Nolan DJ, Rose R, McGrath MS. Brain-specific HIV Nef identified in multiple patients with neurological disease. J Neurovirol. 2018 Feb;24(1):1-15. doi: 10.1007/s13365-017-0586-0. Epub 2017 Oct 23. PMID: 29063512; PMCID: PMC5792318.
  40. Lee HR, Li F, Choi UY, Yu HR, Aldrovandi GM, Feng P, Gao SJ, Hong YK, Jung JU. Deregulation of HDAC5 by Viral Interferon Regulatory Factor 3 Plays an Essential Role in Kaposi’s Sarcoma-Associated Herpesvirus-Induced Lymphangiogenesis. mBio. 2018 Jan 16;9(1):e02217-17. doi: 10.1128/mBio.02217-17. PMID: 29339432; PMCID: PMC5770555.
  41. Nolan DJ, Rose R, Rodriguez PH, Salemi M, Singer EJ, Lamers SL, McGrath MS. The Spleen Is an HIV-1 Sanctuary During Combined Antiretroviral Therapy. AIDS Res Hum Retroviruses. 2018 Jan;34(1):123-125. doi: 10.1089/AID.2017.0254. Epub 2017 Nov 30. PMID: 29084441; PMCID: PMC5771542.
  42. Thakker S, Strahan RC, Scurry AN, Uppal T, Verma SC. KSHV LANA upregulates the expression of epidermal growth factor like domain 7 to promote angiogenesis. Oncotarget. 2017 Dec 19;9(1):1210-1228. doi: 10.18632/oncotarget.23456 eCollection 2018 Jan 2. PMID: 29416688; PMCID: PMC5787431
  43. Yakovleva A, Plieskatt JL, Jensen S, Humeida R, Lang J, Li G, Bracci P, Silver S, Bethony JM. Fit for genomic and proteomic purposes: Sampling the fitness of nucleic acid and protein derivatives from formalin fixed paraffin embedded tissue. PloS one. 2017;12(7):e0181756. Epub 2017/07/26. doi: 10.1371/journal.pone.0181756. PubMed PMID: 28742856; PMCID: Pmc5526578.
  44. Yanik EL, Kaunitz GJ, Cottrell TR, Succaria F, McMiller TL, Ascierto ML, Esandrio J, Xu H, Ogurtsova A, Cornish T, Lipson EJ, Topalian SL, Engels EA, Taube JM. Association of HIV Status With Local Immune Response to Anal Squamous Cell Carcinoma: Implications for Immunotherapy.JAMA oncology. 2017. Epub 2017/03/24. doi: 10.1001/jamaoncol.2017.0115. PubMed PMID: 28334399.
  45. Lee S, Byakwaga H, Boum Y, Burdo TH, Williams KC, Lederman MM, Huang Y, Tracy RP, Cao H, Haberer JE, Kembabazi A, Bangsberg DR, Martin JN, Hunt PW. Immunologic Pathways That Predict Mortality in HIV-Infected Ugandans Initiating Antiretroviral Therapy.J Infect Dis. 2017 Apr 15;215(8):1270-1274. doi: 10.1093/infdis/jix113. PubMed PMID: 28329310.
  46. Lee GQ, McCluskey S, Boum Y 2nd, Hunt PW, Martin JN, Bangsberg DR, Gao X, Harrigan PR, Haberer JE, Siedner MJ. Brief Report: Should Abacavir Be a First-Line Alternative for Adults With HIV in Sub-Saharan Africa?J Acquir Immune Defic Syndr. 2017 Oct 1;76(2):188-192. doi: 10.1097/QAI.0000000000001487. PubMed PMID: 28639996; PubMed Central PMCID: PMC5597467.
  47. Lee GQ, Bangsberg DR, Mo T, Lachowski C, Brumme CJ, Zhang W, Lima VD, Boum Y 2nd, Mwebesa BB, Muzoora C, Andia I, Mbalibulha Y, Kembabazi A, Carroll R, Siedner MJ, Haberer JE, Mocello AR, Kigozi SH, Hunt PW, Martin JN, Harrigan PR. Prevalence and clinical impacts of HIV-1 intersubtype recombinants in Uganda revealed by near-full-genome population and deep sequencing approaches. AIDS.2017 Aug 21. doi: 10.1097/QAD.0000000000001619. [Epub ahead of print] PubMed PMID: 28832407.
  48. Lamers SL, Fogel GB, Liu ES, Nolan DJ, Salemi M, Barbier AE, Rose R, Singer EJ, McGrath MS.Predicted coreceptor usage at end-stage HIV disease in tissues derived from subjects on antiretroviral therapy with an undetectable plasma viral load.Infect Genet Evol. 2017 Apr 6;51:194-197. doi: 10.1016/j.meegid.2017.04.004. [Epub ahead of print] PubMed PMID: 28392467.
  49. Browne SH, Diaz-Perez JA, Preziosi M, King CC, Jones GA, Jain S, Sun X, Reid EG, VandenBerg S, Wang HY.mTOR activity in AIDS-related diffuse large B-cell lymphoma.PLoS One. 2017 Feb 13;12(2):e0170771. doi: 10.1371/journal.pone.0170771. eCollection 2017. PubMed PMID: 28192480; PubMed Central PMCID: PMC5305194.
  50. Agerbaek MØ, Pereira MA, Clausen TM, Pehrson C, Oo HZ, Spliid C, Rich JR, Fung V, Nkrumah F, Neequaye J, Biggar RJ, Reynolds SJ, Tosato G, Pullarkat ST, Ayers LW, Theander TG, Daugaard M, Bhatia K, Nielsen MA, Mbulaiteye SM, Salanti A. Burkitt lymphoma expresses oncofetal chondroitin sulfate without being a reservoir for placental malaria sequestration.Int J Cancer. 2017 Apr 1;140(7):1597-1608. doi: 10.1002/ijc.30575. Epub 2017 Feb 6.
  51. Zhu Y, Ramos da Silva S, He M, Liang Q, Lu C, Feng P, Jung JU, Gao SJ.An Oncogenic Virus Promotes Cell Survival and Cellular Transformation by Suppressing Glycolysis.PLoS Pathog. 2016 May 17;12(5):e1005648. doi: 10.1371/journal.ppat.1005648. eCollection 2016 May. PubMed PMID: 27187079; PubMed Central PMCID: PMC4871371.
  52. Siedner MJ, Kim JH, Nakku RS, Hemphill L, Triant VA, Haberer JE, Martin JN, Boum Y 2nd, Kwon DS, Tsai AC, Hunt PW, Okello S, Bangsberg DR.HIV infection and arterial stiffness among older-adults taking antiretroviral therapy in rural Uganda. 2016 Feb 20;30(4):667-70. doi: 10.1097/QAD.0000000000000992. PubMed PMID: 26636926; PubMed Central PMCID: PMC4733585.
  53. Siedner MJ, Kim JH, Nakku RS, Bibangambah P, Hemphill L, Triant VA, Haberer JE, Martin JN, Mocello AR, Boum Y 2nd, Kwon DS, Tracy RP, Burdo T, Huang Y, Cao H, Okello S, Bangsberg DR, Hunt PW. Persistent Immune Activation and Carotid Atherosclerosis in HIV-Infected Ugandans Receiving Antiretroviral Therapy.J Infect Dis. 2016 Feb 1;213(3):370-8. doi: 10.1093/infdis/jiv450. Epub 2015 Sep 7. PubMed PMID: 26347573; PubMed Central PMCID: PMC4704672.
  54. Schneider JW, Sanderson M, Geiger D, Nokta M, Silver S.A biobank to support HIV malignancy research for sub-Saharan Africa.S Afr Med J. 2016 Aug 2;106(9):867-9. doi: 10.7196/SAMJ.2016.v106i9.10891 PMID:27601106
  55. Rose R, Lamers SL, Nolan DJ, Maidji E, Faria NR, Pybus OG, Dollar JJ, Maruniak SA, McAvoy AC, Salemi M, Stoddart CA, Singer EJ, McGrath MS.HIV Maintains an Evolving and Dispersed Population in Multiple Tissues during Suppressive Combined Antiretroviral Therapy in Individuals with Cancer.J Virol. 2016 Sep 29;90(20):8984-93. doi: 10.1128/JVI.00684-16. Print 2016 Oct 15. PubMed PMID: 27466425; PubMed Central PMCID: PMC5044847.
  56. Rahimi A, Anmole G, Soto-Nava M, Escamilla-Gomez T, Markle T, Jin SW, Lee GQ, Harrigan PR, Bangsberg DR, Martin J, Avila-Rios S, Reyes-Teran G, Brockman MA, Brumme ZL.In vitro functional assessment of natural HIV-1 group M Vpu sequences using a universal priming approach.J Virol Methods. 2017 Feb;240:32-41. doi: 10.1016/j.jviromet.2016.11.004. Epub 2016 Nov 16. PubMed PMID: 27865749; PubMed Central PMCID: PMC5183569.
  57. Okello S, Asiimwe SB, Kanyesigye M, Muyindike WR, Boum Y 2nd, Mwebesa BB, Haberer JE, Huang Y, Williams K, Burdo TH, Tracy RP, Bangsberg DR, Mocello AR, Martin JN, Hunt PW, Siedner MJ. D-Dimer Levels and Traditional Risk Factors Are Associated With Incident Hypertension Among HIV-Infected Individuals Initiating Antiretroviral Therapy in Uganda.J Acquir Immune Defic Syndr. 2016 Dec 1;73(4):396-402. PubMed PMID: 27171743; PubMed Central PMCID: PMC5085880.
  58. Monaco CL, Gootenberg DB, Zhao G, Handley SA, Ghebremichael MS, Lim ES, Lankowski A, Baldridge MT, Wilen CB, Flagg M, Norman JM, Keller BC, Luévano JM, Wang D, Boum Y, Martin JN, Hunt PW, Bangsberg DR, Siedner MJ, Kwon DS, Virgin HW.Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome.Cell Host Microbe. 2016 Mar 9;19(3):311-22. doi: 10.1016/j.chom.2016.02.011. PubMed PMID: 26962942; PubMed Central PMCID: PMC4821831.
  59. Matthews LT, Ribaudo HB, Kaida A, Bennett K, Musinguzi N, Siedner MJ, Kabakyenga J, Hunt PW, Martin JN, Boum Y, Haberer JE, Bangsberg DR.HIV-Infected Ugandan Women on Antiretroviral Therapy Maintain HIV-1 RNA Suppression Across Periconception, Pregnancy, and Postpartum Periods.J Acquir Immune Defic Syndr. 2016 Apr 1;71(4):399-406. doi: 10.1097/QAI.0000000000000874. PubMed PMID: 26495883; PubMed Central PMCID: PMC4943862.
  60. Lee SA, Mefford JA, Huang Y, Witte JS, Martin JN, Haas DW, Mclaren PJ, Mushiroda T, Kubo M, Byakwaga H, Hunt PW, Kroetz DL.Host genetic predictors of the kynurenine pathway of tryptophan catabolism among treated HIV-infected Ugandans. 2016 Jul 17;30(11):1807-15. doi: 10.1097/QAD.0000000000001124. PubMed PMID: 27088321; PubMed Central PMCID: PMC4925250.
  61. Lee GQ, Lachowski C, Cai E, Lima VD, Boum Y, Muzoora C, Mocello AR, Hunt PW, Martin JN, Bangsberg DR, Harrigan PR.Non-R5-tropic HIV-1 in subtype A1 and D infections were associated with lower pretherapy CD4+ cell count but not with PI/(N)NRTI therapy outcomes in Mbarara, Uganda. 2016 Jul 17;30(11):1781-8. doi: 10.1097/QAD.0000000000001128. PubMed PMID: 27124899; PubMed Central PMCID: PMC4925292.
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  63. Lamers SL, Rose R, Ndhlovu LC, Nolan DJ, Salemi M, Maidji E, Stoddart CA, McGrath MS.The meningeal lymphatic system: a route for HIV brain migration?J Neurovirol. 2016 Jun;22(3):275-81. doi: 10.1007/s13365-015-0399-y. Epub 2015 Nov 16. Review. PubMed PMID: 26572785; PubMed Central PMCID: PMC4868798.
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  81. Iliyasu Y, Ayers LW, Liman AA, Waziri GD, Shehu SM.Epstein-barr virus association with malignant lymphoma subgroups in Zaria, Nigeria.Niger J Surg Sci. 2014;23(1):6-8. PubMed PMID: 25620871; PubMed Central PMCID: PMC4302412.
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  91. Roy D, Dittmer DP.Phosphatase and tensin homolog on chromosome 10 is phosphorylated in primary effusion lymphoma and Kaposi’s sarcoma. Am J Pathol. 2011 Oct;179(4):2108-19. doi: 10.1016/j.ajpath.2011.06.017. Epub 2011 Aug 3. PubMed PMID: 21819957; PubMed Central PMCID: PMC3181371.
  92. Ogwang MD, Zhao W, Ayers LW, Mbulaiteye SM.Accuracy of Burkitt lymphoma diagnosis in constrained pathology settings: importance to epidemiology.Arch Pathol Lab Med. 2011 Apr;135(4):445-50. doi: 10.1043/2009-0443-EP.1. PubMed PMID: 21466360; PubMed Central PMCID: PMC3357109.
  93. Naresh KN, Raphael M, Ayers L, Hurwitz N, Calbi V, Rogena E, Sayed S, Sherman O, Ibrahim HA, Lazzi S, Mourmouras V, Rince P, Githanga J, Byakika B, Moshi E, Durosinmi M, Olasode BJ, Oluwasola OA, Akang EE, Akenòva Y, Adde M, Magrath I, Leoncini L.Lymphomas in sub-Saharan Africa–what can we learn and how can we help in improving diagnosis, managing patients and fostering translational research?Br J Haematol. 2011 Sep;154(6):696-703. doi: 10.1111/j.1365-2141.2011.08772.x. Epub 2011 Jun 28. Review. PubMed PMID: 21707579; PubMed Central PMCID: PMC4207091.
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  95. Ayers LW, Silver S, Orenstein JM, McGrath MS, Garcia DL.The AIDS and Cancer Specimen Resource.Methods Mol Biol. 2011;675:193-203. doi: 10.1007/978-1-59745-423-0_8. PubMed PMID: 20949389.
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  102. Lamers SL, Salemi M, Galligan DC, Morris A, Gray R, Fogel G, Zhao L, McGrath MS.Human immunodeficiency virus-1 evolutionary patterns associated with pathogenic processes in the brain.J Neurovirol. 2010 May;16(3):230-41. doi: 10.3109/13550281003735709. PubMed PMID: 20367240; PubMed Central PMCID: PMC2994721.
  103. Lamers SL, Fogel GB, McGrath MS.HIV-miR-H1 evolvability during HIV pathogenesis. 2010 Aug;101(2):88-96. doi: 10.1016/j.biosystems.2010.05.001. Epub 2010 May 31. PubMed PMID: 20546828; PubMed Central PMCID: PMC3478900
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  108. Ayers LW, Lukande R, Tumwine LK. Diagnosis of HIV-related malignancies in resource-constrained settings of sub-Saharan Africa, a cautionary tale for non-Hodgkin’s lymphoma.Infectious Agents and Cancer. 2010 Oct 11; 5(Suppl 1): A19 PMCID: PMC3002676, PMID: 0, DOI: 10.1186/1750-9378-5-S1-A19
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  111. Zhao L, Galligan DC, Lamers SL, Yu S, Shagrun L, Salemi M, McGrath MS.High level HIV-1 DNA concentrations in brain tissues differentiate patients with post-HAART AIDS dementia complex or cardiovascular disease from those with AIDS.Sci China C Life Sci. 2009 Jul;52(7):651-6. doi: 10.1007/s11427-009-0085-5. Epub 2009 Jul 30. PubMed PMID: 19641870.
  112. Salemi M, Lamers SL, Huysentruyt LC, Galligan D, Gray RR, Morris A, McGrath MS.Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphoma.PLoS One. 2009 Dec 3;4(12):e8153. doi: 10.1371/journal.pone.0008153. PubMed PMID: 19997510; PubMed Central PMCID: PMC2780293.
  113. Sadagopan S, Sharma-Walia N, Veettil MV, Bottero V, Levine R, Vart RJ, Chandran B.Kaposi’s sarcoma-associated herpesvirus upregulates angiogenin during infection of human dermal microvascular endothelial cells, which induces 45S rRNA synthesis, antiapoptosis, cell proliferation, migration, and angiogenesis.J Virol. 2009 Apr;83(7):3342-64. doi: 10.1128/JVI.02052-08. Epub 2009 Jan 21. PubMed PMID: 19158252; PubMed Central PMCID: PMC2655544.
  114. Punj V, Matta H, Schamus S, Yang T, Chang Y, Chaudhary PM.Induction of CCL20 production by Kaposi sarcoma-associated herpesvirus: role of viral FLICE inhibitory protein K13-induced NF-kappaB activation. 2009 May 28;113(22):5660-8. doi: 10.1182/blood-2008-10-186403. Epub 2009 Mar 26. PubMed PMID: 19324905; PubMed Central PMCID: PMC2689059.
  115. Mwanda WO, Orem J, Fu P, Banura C, Kakembo J, Onyango CA, Ness A, Reynolds S, Johnson JL, Subbiah V, Bako J, Wabinga H, Abdallah FK, Meyerson HJ, Whalen CC, Lederman MM, Black J, Ayers LW, Katongole-Mbidde E, Remick SC.Dose-modified oral chemotherapy in the treatment of AIDS-related non-Hodgkin’s lymphoma in East Africa.J Clin Oncol. 2009 Jul 20;27(21):3480-8. doi: 10.1200/JCO.2008.18.7641. Epub 2009 May 26. PubMed PMID: 19470940; PubMed Central PMCID: PMC2717754.
  116. Meaburn KJ, Gudla PR, Khan S, Lockett SJ, Misteli T. Disease-specific gene repositioning in breast cancer.The Journal of Cell Biology. 2009 Dec 14; 187(6): 801-812 PMCID: PMC2806312, PMID: 19995938, DOI: 10.1083/jcb.200909127
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  118. Lamers SL, Salemi M, Galligan DC, de Oliveira T, Fogel GB, Granier SC, Zhao L, Brown JN, Morris A, Masliah E, McGrath MS.Extensive HIV-1 intra-host recombination is common in tissues with abnormal histopathology.PLoS One. 2009;4(3):e5065. doi: 10.1371/journal.pone.0005065. Epub 2009 Mar 31. PubMed PMID: 19333384; PubMed Central PMCID: PMC2659430.
  119. Lagos D, Trotter MW, Vart RJ, Wang HW, Matthews NC, Hansen A, Flore O, Gotch F, Boshoff C.Kaposi sarcoma herpesvirus-encoded vFLIP and vIRF1 regulate antigen presentation in lymphatic endothelial cells. 2007 Feb 15;109(4):1550-8. Epub 2006 Oct 17. PubMed PMID: 17047149.
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  125. Salemi M, Lamers SL, Yu S, de Oliveira T, Fitch WM, McGrath MS.Phylodynamic analysis of human immunodeficiency virus type 1 in distinct brain compartments provides a model for the neuropathogenesis of AIDS.J Virol. 2005 Sep;79(17):11343-52. PubMed PMID: 16103186; PubMed Central PMCID: PMC1193641.
  126. Orem J, Otieno MW, Banura C, Katongole-Mbidde E, Johnson JL, Ayers L, Ghannoum M, Fu P, Feigal EG, Black J, Whalen C, Lederman M, Remick SC.Capacity building for the clinical investigation of AIDS malignancy in East Africa.Cancer Detect Prev. 2005;29(2):133-45. PubMed PMID: 15829373.
  127. Nohle DG, Hackman BA, Ayers LW.The tissue micro-array data exchange specification: a web based experience browsing imported data.BMC Med Inform Decis Mak. 2005 Aug 8;5:25. PubMed PMID: 16086837; PubMed Central PMCID: PMC1208890.
  128. Nohle DG, Ayers LW.The tissue microarray data exchange specification: a document type definition to validate and enhance XML data.BMC Med Inform Decis Mak. 2005 May 4;5:12. PubMed PMID: 15871741; PubMed Central PMCID: PMC1183103.
  129. Marchiò S, Alfano M, Primo L, Gramaglia D, Butini L, Gennero L, De Vivo E, Arap W, Giacca M, Pasqualini R, Bussolino F.Cell surface-associated Tat modulates HIV-1 infection and spreading through a specific interaction with gp120 viral envelope protein. 2005 Apr 1;105(7):2802-11. Epub 2004 Dec 9. PubMed PMID: 15591114.
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  132. Baliga RS, Chaves AA, Jing L, Ayers LW, Bauer JA.AIDS-related vasculopathy: evidence for oxidative and inflammatory pathways in murine and human AIDS.Am J Physiol Heart Circ Physiol. 2005 Oct;289(4):H1373-80. Epub 2005 May 27. PubMed PMID: 15923317.
  133. Milligan S, Robinson M, O’Donnell E, Blackbourn DJ.Inflammatory cytokines inhibit Kaposi’s sarcoma-associated herpesvirus lytic gene transcription in in vitro-infected endothelial cells.J Virol. 2004 Mar;78(5):2591-6. PubMed PMID: 14963163; PubMed Central PMCID: PMC369204.
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